These tutorials are out of date, please see http://cmic.cs.ucl.ac.uk/camino for current tutorials and documentation.
While most of the current code is backwards compatible, some of the commands here may no longer work. Please see the current tutorials at the new site before emailing us with problems. Thanks.
Input data to Camino
Topics covered:
NIfTI conversion to Camino raw format
Dealing with diffusion tensors in NIfTI format
Detecting Crossing Fibres in the post-mortem pig brain
Topics covered:
Creating FA map 
Creating Tr(D) map 
Creating colour-coded direction map 
Detecting fibre crossings
Using camino to generate and use Q-Ball data
Topics covered:
Extracting useful information about the peaks of the Q-Ball ODFs
Visualising Q-Ball ODF fibre-orientation estimates
Tractography tutorial - generating and visualising results
Topics covered:
Viewing the colour-coded direction map with pdview 
Using an ROI 
Streamline Tractography 
Probabilistic Tractography using PICo. 
Parallel processing of PICo probability maps.Tractography with q-ball and PASMRI
Topics covered:
Running reduced-encoding PASMRI
Deterministic tractography with PASMRI or q-ball
PICo calibration with PASMRI or q-ball
Probabilistic tractography with PASMRI or q-ball
Connectivity Mapping
Topics covered:
How to construct a connectivity matrix
Connectivity segmentation: more tractography operations
Topics covered:
PICo using waypoints and target ROIs 
Segmenting brain structures by connectivity Running PASMRI using parallel processing
Topics covered:
Creating PAS plots.
Using camino to produce synthetic data
Topics covered:
Synthetic data using Monte-Carlo simulation
Generating statistics on fibre orientation estimates
Constructing data files using shredder
Synthetic data for fibre-crossing studies
Spatial normalization and warping of tensor images
Topics covered:
Using flirt to compute affine transformations between images
Warping a diffusion tensor image
Reorienting diffusion tensors for consistency with the image transformation
Registering the DWIs within a single acquisition
Topics covered:
- Preparation before running mbalign
Run mbalign
Improve performance
Update Gradient
More hints
Creating a general-waveform schemefile
Topics covered:
What is a gen-wave?
Scheme-file format
Explanation of parameters
More advanced Monte-Carlo Simulations
This is intended as an overview of the capabilities of the Camino Monte-Carlo
simulation. It contains sample commands for different substrates and describes
other features of the simualtion that aren't documented elsewhere.
Topics covered:
Regular-packed cylinder substrates
Disordered, Gamma-distributed cylinder substrates
Crossing fibre substrates
Mesh substrates
Different scheme files
Permeability
Other measurement options
Mapping axon density and diameter with ActiveAx
Example data and data preparation.
Model fitting.
Generating parameter maps.