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scheme2fsl

Section: User Commands (1)
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NAME

scheme2fsl - Reads a Camino scheme file and writes FSL bvecs and bvals files.

SYNOPSIS

scheme2fsl -bscale <factor> [-flipx] [-flipy] [-flipz]

DESCRIPTION

This program reads a Camino scheme file and writes FSL b-vector and b-value files. The b-values are assumed to be specified in s / m^2 in the scheme file. The default scaling factor is therefore 10^{-6}, to produce b-values with units of s/mm^{-2} in the output. Use -bscale 1.0 to preserve the units.

Some scheme formats do not specify the b-value explicitly - in which case the b-value is calculated by this program in the same way that it is calculated the input scheme file is used by Camino for diffusion tensor reconstruction.

EXAMPLES

Output bvals and bvecs in the current directory.

scheme2fsl -inputfile A.scheme -outputroot A

OPTIONS

-bscale <factor>: Scaling factor to convert the b-values into different units. Default is 10^{-6}, converts s / m^2 to s / mm^2.
-flipx: Negate the x component of all the vectors.
-flipy: Negate the y component of all the vectors.
-flipz: Negate the z component of all the vectors.

AUTHORS

Philip Cook <camino@cs.ucl.ac.uk>

BUGS

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Time: 02:07:11 GMT, December 04, 2017

Scheme2fsl