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This is the UCL Centre for Medical Image Computing (CMIC) wiki. The official CMIC webpage is here.
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Admin
For any queries regarding the administration of CMIC please contact Dominique Drai on Ext. 31320 betweeen 09:30 and 13:30. Dominique is located in room 4.13
Requests for a Wiki user name and password should be sent to Ron.
Holiday request form Media:leave-form.pdf
People
People at CMIC. Please enter your phone numbers, email address, room number, and whatever else at this address.
Software
Information on software used, (or which could be used) at CMIC.
- vtkCmic Mark and David's classes for registration etc.
- Fluid Registration Details about Bill Crum's fluid implementation and related tools.
- Matlab Numerical linear algebra software, with toolboxes for image processing, stats, optimisation, etc.
- VTK C++ visualisation classes (some sort of interface to OpenGL).
- Insight Toolkit (ITK) C++ imaging and image processing, registration, algorithms classes.
- ITK++ C++ Daniel and Julia's image processing and registration classes
- TNT C++ templated matrix classes.
- SPM Matlab toolbox for segmentation, spatial normalisation, and voxel-wise statistical analysis of brain images.
- FSL Similar toolbox/library written in C/C++. Popular tools include FLIRT, BET, and FAST.
- Plus see the list at Structural-Neuro#Useful_Neuro_Software.
- Image File Formats Software available to read and manipulate image file formats and DICOM images in particular.
- FAQ
- Nifti
- Misc. General (not medical-imaging) tools, e.g. Bibliography software, PDF tools, etc.
- SSH
- New CMIC Wiki Discussion on a new CMIC Wiki / web pages
Projects
Pages for specific projects at CMIC.
- CMIC Cluster Sunfire Cluster - Comic100
- Moving Liver
- Diffusion MRI
- LSQR reconstruction of MRI
- CMIC Logo (images for your talks etc)
- Structural-Neuro
- UCLSiemensMRphysics UCL Siemens MR Physics user group
PhD
Information specific to CMIC PhD students.
Seminars
Information on seminars at CMIC.
- ImPr Pages Informal seminars on image processing.
- CMIC seminars. Seminars on research at CMIC and outside.
- JournalClub Information on the new CMIC Journal Club - Coming soon.
Science-div
Useful links
- ISMRM ISMRM British Chapter
- MathWorld
- E-Journals (UCL)
- Abramowitz and Stegun Math Tables
- Numerical Recipes
Room bookings: CS UCL Med Phys
Ethics
- Self plagiarism (with Splat tool)
- CAFAS, academic freedom in uk
Undergraduate Projects
David Atkinson's on Parallel computing for the reconstruction of magnetic resonance images.
Please see documentation on customizing the interface and the User's Guide for usage and configuration help.
Postgraduate
Reading Material
Books
Physics for Diagnostic Radiology. P.P.Dendy B.Heaton, IoP, Paperback. Taylor & Francis Ltd, Bristol, UK, 1999
The Physics of Medical Imaging Webb S. (ed)
Scientific Basis of Medical Imaging Wells P.N.T. (ed) Churchill Livingstone Edinburgh 1982.
