From CMIC-wiki

This is the CMIC wiki. The official CMIC webpage is here that's the page for pompous statements...Here it's for useful stuff.

Contents 1 Admin 2 People 3 Software 4 Projects 5 PhD 6 Seminars 6.1 ImPr 6.2 CMIC Official Seminars 6.3 CMIC Journal Club 6.4 External Seminars 7 Science-div 7.1 Useful links 7.2 Conferences 7.3 Ethics 8 Undergraduate Projects 9 Postgraduate 10 Reading Material 10.1 Books 10.2 Review articles

Admin

For any queries regarding the administration of CMIC please contact Dominique Drai on Ext. 31320 betweeen 09:30 and 13:30. Dominique is located in room 4.13

Holiday request form Media:leave-form.pdf

People

People at CMIC. Please enter your phone numbers, email address, room number, and whatever else at this address.

Software

Information on software used, (or which could be used) at CMIC.

• vtkCmic Mark and David's classes for registration etc.
• Fluid Registration Details about Bill Crum's fluid implementation and related tools.
• Matlab Numerical linear algebra software, with toolboxes for image processing, stats, optimisation, etc.
• VTK C++ visualisation classes (some sort of interface to OpenGL).
• Insight Toolkit (ITK) C++ imaging and image processing, registration, algorithms classes.
• ITK++ C++ Daniel and Julia's image processing and registration classes
• TNT C++ templated matrix classes.
• SPM Matlab toolbox for segmentation, spatial normalisation, and voxel-wise statistical analysis of brain images.
• FSL Similar toolbox/library written in C/C++. Popular tools include FLIRT, BET, and FAST.
• Plus see the list at Structural-Neuro#Useful_Neuro_Software.
• Image File Formats Software available to read and manipulate images file formats and DICOM images in particular.
• FAQ
• Nifti
• Misc. General (not medical-imaging) tools, e.g. Bibliography software, PDF tools, etc.
• SSH

Projects

Pages for specific projects at CMIC.

• CMIC Cluster Sunfire Cluster - Comic100
• Moving Liver
• Diffusion MRI
• LSQR reconstruction of MRI
• CMIC Logo (images for your talks etc)
• Structural-Neuro

PhD

Information specific to CMIC PhD students.

PhD Pages

Seminars

Information on seminars at CMIC.

ImPr

Informal seminars on image processing. ImPr Pages

CMIC Official Seminars

More formal seminars on research at CMIC and outside.

Official seminar page

CMIC Journal Club

Information on the new CMIC Journal Club - Coming soon.

JournalClub

External Seminars

Put here links to external seminars of interest.

Science-div

Useful links

• ISMRM ISMRM British Chapter
• MathWorld
• E-Journals (UCL)
• Abramowitz and Stegun Math Tables
• Numerical Recipes

Room bookings: CS UCL Med Phys

DA testing UCLSMRP:UCL Siemens MR Physics

Conferences

What	When	Where
ISMRM	24 Mar 2006 (adv reg); 6-12 May 2006	Seattle
BMVC	12 Apr 2006 (sub); 12 Jun (acc); 3 Jul 2006 (camready); 4-7 Sep 2006	Edinburgh
MMBIA	23 Jan 2006 (sub); 1 Mar 2006 (acc); 1 Apr 2006 (cam ready); 17-18 Jun 2006	NY
MIUA	24 Apr 2006 (sub); 23 May 2006 (acc); 11 Jun 2006 (cam read); 4-5 Jul 2006	Manchester
MICCAI	http://www.miccai2006.dk/	Copenhagen
ESMRMB	26 May 2006 (sub); 21-23 Sep 2006 (mtg)	Warsaw

See also the calendar at www.ismrm.org.uk

Ethics

• Self plagiarism (with Splat tool)
• CAFAS, academic freedom in uk

Undergraduate Projects

David Atkinson's on Parallel computing for the reconstruction of magnetic resonance images.

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Please see documentation on customizing the interface and the User's Guide for usage and configuration help.

Postgraduate

• Maths for Engineer Summer School

Reading Material

Books

Physics for Diagnostic Radiology. P.P.Dendy B.Heaton, IoP, Paperback. Taylor & Francis Ltd, Bristol, UK, 1999

The Physics of Medical Imaging Webb S. (ed)

Scientific Basis of Medical Imaging Wells P.N.T. (ed) Churchill Livingstone Edinburgh 1982.

Review articles