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| Press WH et al. 'Numerical Recipes in C: The Art of Scientific Computing', Cambridge University Press. | Press WH et al. 'Numerical Recipes in C: The Art of Scientific Computing', Cambridge University Press. | ||
| - | The explanations of algorithms in this book are very good. | + | The explanations of algorithms in this book are very good. Sections of the book are |
| + | online from the Numerical Recipes web site. | ||
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| '''Signal Processing''' | '''Signal Processing''' | ||
Revision as of 16:02, 12 January 2007
This is the UCL Centre for Medical Image Computing (CMIC) wiki. The official CMIC webpage is here.
Contents |
The CMIC Group
Administration
For any queries regarding the administration of CMIC please contact Dominique Drai on Ext. 31320 betweeen 09:30 and 13:30. Dominique is located in room 4.13
Requests for a Wiki user name and password should be sent to Ron.
Holiday request form Media:leave-form.pdf
Room bookings: CS UCL Med Phys
People
People at CMIC. Please enter your phone numbers, email address, room number, and whatever else at this address.
PhD
PhD Pages Information specific to CMIC PhD students.
Seminars
Information on seminars at CMIC.
- ImPr Pages Informal seminars on image processing.
- CMIC seminars. Seminars on research at CMIC and outside.
- CMIC Journal Club Information on the new CMIC Journal Club - Coming soon.
Software
Information on software used, (or which could be used) at CMIC.
- vtkCmic Mark and David's classes for registration etc.
- Fluid Registration Details about Bill Crum's fluid implementation and related tools.
- Matlab Numerical linear algebra software, with toolboxes for image processing, stats, optimisation, etc.
- VTK C++ visualisation classes (some sort of interface to OpenGL).
- Insight Toolkit (ITK) C++ imaging and image processing, registration, algorithms classes.
- ITK++ C++ Daniel and Julia's image processing and registration classes
- TNT C++ templated matrix classes.
- SPM Matlab toolbox for segmentation, spatial normalisation, and voxel-wise statistical analysis of brain images.
- FSL Similar toolbox/library written in C/C++. Popular tools include FLIRT, BET, and FAST.
- Plus see the list at Structural-Neuro#Useful_Neuro_Software.
- Image File Formats Software available to read and manipulate image file formats and DICOM images in particular.
- FAQ
- Nifti
- Misc. General (not medical-imaging) tools, e.g. Bibliography software, PDF tools, etc.
- SSH
- New CMIC Wiki Discussion on a new CMIC Wiki / web pages
Projects
Pages for specific projects at CMIC.
- CMIC Cluster Sunfire Cluster - Comic100
- Moving Liver
- Diffusion MRI
- LSQR reconstruction of MRI
- CMIC Logo (images for your talks etc)
- Structural-Neuro
- UCLSiemensMRphysics UCL Siemens MR Physics user group.
- UCL Imaging Software Discussion on possible coordination of UCL Medical Imaging Software.
Science-div
Useful links
- ISMRM ISMRM British Chapter
- MathWorld
- E-Journals (UCL)
- Abramowitz and Stegun Math Tables
- Numerical Recipes
Ethics
- Self plagiarism (with Splat tool)
- CAFAS, academic freedom in uk
Undergraduate and MSc Projects
UGprojectDA on Parallel computing for the reconstruction of magnetic resonance images.
Postgraduate
Reading Material
Books
Medical Imaging
Webb S. (ed) 'The Physics of Medical Imaging'
Magnetic Resonance Imaging
McRobbie et al., 'MRI From Picture to Proton', Cambridge University Press. An excellent book for learning about MRI.
Liang ZP and Lauterbur PC. 'Principles of Magnetic Resonance Imaging: A Signal Processing Perspective' IEEE Press. MRI from a signal processing perspective.
Haacke EM et al. 'Magnetic Resonance Imaging: Physical Principles and Sequence Design', Wiley-Liss. A classic reference book.
Vlaardingerbroek MT et al., 'Magnetic Resonance Imaging', Springer. A more detailed book about MR sequences.
Bernstein MA et al., 'Handbook of MRI Pulse Sequences', Elsevier. A useful reference for programming MR scanners.
Scientific Computing
Heath MT. 'Scientific Computing: An Introductory Survey', McGrawHill.
Press WH et al. 'Numerical Recipes in C: The Art of Scientific Computing', Cambridge University Press. The explanations of algorithms in this book are very good. Sections of the book are online from the Numerical Recipes web site.
Signal Processing
Bracewell RN. 'The Fourier Transform and its Applications', McGraw-Hill. A classic text on the Fourier Transform.
Image Processing
Gonzalez RC and Woods RE. 'Digital Image Processing', Addison Wesley.
Foley et al. 'Computer Graphics: Principles and Practice', Addison Wesley.
Sonka M, Boyle R and Hlavic V. 'Image Processing:Analysis and Machine Vision'.
Diagnostic Radiology and Computerized Tomography
Barrett and Swindell. 'Radiological Imaging', Academic Press.
Coulan et al. 'The physical basis of medical imaging', Appleton-Century-Crofts.
Natterer 'The mathematics of computerized tomography', John Wiley and Sons
Herman. 'Image reconstruction from projections', Academic Press.
On-line
MATLAB tutorials etc from the Mathworks student centre: http://www.mathworks.com/academia/student_center/
Journal and Review Articles
Special issue on parallel imaging of NMR in Biomedicine Volume 19, Issue 3, Pages 287-408 (May 2006) see http://www3.interscience.wiley.com/cgi-bin/jissue/112607009
Please see documentation on customizing the interface and the User's Guide for usage and configuration help.
